qslibΒΆ
- qslib package
- Submodules
- qslib.cli module
- qslib.common module
- qslib.data module
- qslib.experiment module
AlreadyExistsCompleteErrorAlreadyExistsErrorAlreadyExistsWorkingErrorAlreadyStartedErrorDataLoadingErrorDataNotAvailableErrorExperimentExperiment.abort()Experiment.activeendtimeExperiment.activestarttimeExperiment.all_filtersExperiment.amplification_dataExperiment.analysis_resultExperiment.available_data()Experiment.calibrationsExperiment.change_protocol()Experiment.change_protocol_from_now()Experiment.createdtimeExperiment.data_for_sample()Experiment.eventsExperiment.filter_dataExperiment.filter_data_polarsExperiment.filter_data_polars_lazy()Experiment.filter_stringsExperiment.from_file()Experiment.from_machine()Experiment.from_machine_storage()Experiment.from_running()Experiment.from_uncollected()Experiment.get_status()Experiment.info()Experiment.info_html()Experiment.latest_from_machine()Experiment.machineExperiment.modifiedtimeExperiment.multicomponent_dataExperiment.nameExperiment.num_zonesExperiment.pause_now()Experiment.plate_setupExperiment.plot_anneal_melt()Experiment.plot_over_time()Experiment.plot_over_time_altair()Experiment.plot_protocol()Experiment.plot_temperatures()Experiment.protocolExperiment.quant_data_from_tiffs_polarsExperiment.quant_data_polarsExperiment.raw_dataExperiment.resume()Experiment.roi_calibrationExperiment.root_dirExperiment.run()Experiment.runendtimeExperiment.runstarttimeExperiment.runstateExperiment.runtitle_safeExperiment.sample_wellsExperiment.save_file()Experiment.spec_major_versionExperiment.stop()Experiment.summary()Experiment.sync_from_machine()Experiment.temperature_ramps_polarsExperiment.temperature_setpoints_polarsExperiment.temperaturesExperiment.temperatures_polarsExperiment.temperatures_polars_wideExperiment.tiff_imagesExperiment.welldataExperiment.writesoftware
MachineBusyErrorMachineErrorNotRunningError
- qslib.machine module
AlreadyCollectedErrorFileListInfoFilterDataFilenameMachineMachine.abort_current_run()Machine.access_levelMachine.asdict()Machine.at_access()Machine.authenticate()Machine.automaticMachine.blockMachine.compile_eds()Machine.connect()Machine.connectedMachine.connectionMachine.cover_lower()Machine.cover_positionMachine.current_run_nameMachine.define_protocol()Machine.disconnect()Machine.drawer_close()Machine.drawer_open()Machine.drawer_positionMachine.ensured_connection()Machine.generate_random_key()Machine.get_access_level()Machine.get_all_filterdata()Machine.get_exp_file()Machine.get_expfile_list()Machine.get_filterdata_one()Machine.get_run_start_time()Machine.get_run_title()Machine.get_running_protocol()Machine.get_sds_file()Machine.get_zone_count()Machine.hostMachine.list_files()Machine.list_runs_in_storage()Machine.load_run_from_storage()Machine.machine_status()Machine.max_access_levelMachine.passwordMachine.pause_current_run()Machine.pause_current_run_at_temperature()Machine.portMachine.powerMachine.read_dir_as_zip()Machine.read_file()Machine.restart_system()Machine.resume_current_run()Machine.run_command()Machine.run_command_bytes()Machine.run_command_to_ack()Machine.run_command_to_bytes()Machine.run_status()Machine.save_run_from_storage()Machine.set_access_level()Machine.set_status_led()Machine.sslMachine.statusMachine.status_ledMachine.status_led_off()Machine.stop_current_run()Machine.write_file()
RunNotFinishedError
- qslib.plate_setup module
PlateSetupPlateSetup.from_array()PlateSetup.from_machine()PlateSetup.from_picklist()PlateSetup.from_xml_string()PlateSetup.get_descriptive_string()PlateSetup.get_wells()PlateSetup.plate_typePlateSetup.sample_names_as_array()PlateSetup.sample_wellsPlateSetup.samples_by_namePlateSetup.to_lineprotocol()PlateSetup.to_polars()PlateSetup.to_polars_by_well()PlateSetup.to_table()PlateSetup.to_xml_string()PlateSetup.well_samples
- qslib.processors module
- qslib.protocol module
CustomStepExposureHACFILTHoldHoldAndCollectNZONESProtoCommandProtocolProtocol.all_filtersProtocol.all_pointsProtocol.all_temperaturesProtocol.all_timesProtocol.check_compatible()Protocol.copy()Protocol.covertemperatureProtocol.dataframeProtocol.filtersProtocol.from_scpi_string()Protocol.from_xml()Protocol.fromdict()Protocol.info()Protocol.nameProtocol.plot_protocol()Protocol.postrunProtocol.prerunProtocol.runmodeProtocol.stageProtocol.stagesProtocol.to_scpi_string()Protocol.to_scpi_string_rust()Protocol.to_scpicommand()Protocol.to_xml()Protocol.validate()Protocol.volume
RampStageStepStep.bodyStep.collectStep.collectsStep.duration_at_cycle_point()Step.duration_of_cycle()Step.durations_at_cycle()Step.filtersStep.fromdict()Step.identifierStep.info_str()Step.pcrStep.quantStep.repeatStep.temp_incrementStep.temp_incrementcycleStep.temp_incrementpointStep.temperatureStep.temperature_listStep.temperatures_at_cycle()Step.temperatures_at_cycle_point()Step.tiffStep.timeStep.time_incrementStep.time_incrementcycleStep.time_incrementpointStep.total_duration()
c
- qslib.scpi_commands module
- qslib.version module
- Module contents
AccessLevelCommandErrorCustomStepExperimentExperiment.abort()Experiment.activeendtimeExperiment.activestarttimeExperiment.all_filtersExperiment.amplification_dataExperiment.analysis_resultExperiment.available_data()Experiment.calibrationsExperiment.change_protocol()Experiment.change_protocol_from_now()Experiment.createdtimeExperiment.data_for_sample()Experiment.eventsExperiment.filter_dataExperiment.filter_data_polarsExperiment.filter_data_polars_lazy()Experiment.filter_stringsExperiment.from_file()Experiment.from_machine()Experiment.from_machine_storage()Experiment.from_running()Experiment.from_uncollected()Experiment.get_status()Experiment.info()Experiment.info_html()Experiment.latest_from_machine()Experiment.machineExperiment.modifiedtimeExperiment.multicomponent_dataExperiment.nameExperiment.num_zonesExperiment.pause_now()Experiment.plate_setupExperiment.plot_anneal_melt()Experiment.plot_over_time()Experiment.plot_over_time_altair()Experiment.plot_protocol()Experiment.plot_temperatures()Experiment.protocolExperiment.quant_data_from_tiffs_polarsExperiment.quant_data_polarsExperiment.raw_dataExperiment.resume()Experiment.roi_calibrationExperiment.root_dirExperiment.run()Experiment.runendtimeExperiment.runstarttimeExperiment.runstateExperiment.runtitle_safeExperiment.sample_wellsExperiment.save_file()Experiment.spec_major_versionExperiment.stop()Experiment.summary()Experiment.sync_from_machine()Experiment.temperature_ramps_polarsExperiment.temperature_setpoints_polarsExperiment.temperaturesExperiment.temperatures_polarsExperiment.temperatures_polars_wideExperiment.tiff_imagesExperiment.userExperiment.welldataExperiment.writesoftware
MachineMachine.abort_current_run()Machine.access_levelMachine.asdict()Machine.at_access()Machine.authenticate()Machine.automaticMachine.blockMachine.compile_eds()Machine.connect()Machine.connectedMachine.connectionMachine.cover_lower()Machine.cover_positionMachine.current_run_nameMachine.define_protocol()Machine.disconnect()Machine.drawer_close()Machine.drawer_open()Machine.drawer_positionMachine.ensured_connection()Machine.generate_random_key()Machine.get_access_level()Machine.get_all_filterdata()Machine.get_exp_file()Machine.get_expfile_list()Machine.get_filterdata_one()Machine.get_run_start_time()Machine.get_run_title()Machine.get_running_protocol()Machine.get_sds_file()Machine.get_zone_count()Machine.hostMachine.list_files()Machine.list_runs_in_storage()Machine.load_run_from_storage()Machine.machine_status()Machine.max_access_levelMachine.passwordMachine.pause_current_run()Machine.pause_current_run_at_temperature()Machine.portMachine.powerMachine.read_dir_as_zip()Machine.read_file()Machine.restart_system()Machine.resume_current_run()Machine.run_command()Machine.run_command_bytes()Machine.run_command_to_ack()Machine.run_command_to_bytes()Machine.run_status()Machine.save_run_from_storage()Machine.set_access_level()Machine.set_status_led()Machine.sslMachine.statusMachine.status_ledMachine.status_led_off()Machine.stop_current_run()Machine.write_file()
MachineStatusMachineStatus.block_temperaturesMachineStatus.command()MachineStatus.coverMachineStatus.cover_temperatureMachineStatus.drawerMachineStatus.from_bytes()MachineStatus.lamp_statusMachineStatus.led_temperatureMachineStatus.sample_temperaturesMachineStatus.target_controlledMachineStatus.target_temperatures
NormRawNormToMaxPerWellNormToMeanPerWellPlateSetupPlateSetup.from_array()PlateSetup.from_machine()PlateSetup.from_picklist()PlateSetup.from_xml_string()PlateSetup.get_descriptive_string()PlateSetup.get_wells()PlateSetup.plate_typePlateSetup.sample_names_as_array()PlateSetup.sample_wellsPlateSetup.samples_by_namePlateSetup.to_lineprotocol()PlateSetup.to_polars()PlateSetup.to_polars_by_well()PlateSetup.to_table()PlateSetup.to_xml_string()PlateSetup.well_samples
ProcessorProtocolProtocol.all_filtersProtocol.all_pointsProtocol.all_temperaturesProtocol.all_timesProtocol.check_compatible()Protocol.copy()Protocol.covertemperatureProtocol.dataframeProtocol.filtersProtocol.from_scpi_string()Protocol.from_xml()Protocol.fromdict()Protocol.info()Protocol.nameProtocol.plot_protocol()Protocol.postrunProtocol.prerunProtocol.runmodeProtocol.stageProtocol.stagesProtocol.to_scpi_string()Protocol.to_scpi_string_rust()Protocol.to_scpicommand()Protocol.to_xml()Protocol.validate()Protocol.volume
RunStatusSampleSmoothEMWMeanSmoothWindowMeanStageStatusLedColorStatusLedModeStatusLedSetStatusLedStateStepStep.bodyStep.collectStep.collectsStep.duration_at_cycle_point()Step.duration_of_cycle()Step.durations_at_cycle()Step.filtersStep.fromdict()Step.identifierStep.info_str()Step.pcrStep.quantStep.repeatStep.temp_incrementStep.temp_incrementcycleStep.temp_incrementpointStep.temperatureStep.temperature_listStep.temperatures_at_cycle()Step.temperatures_at_cycle_point()Step.tiffStep.timeStep.time_incrementStep.time_incrementcycleStep.time_incrementpointStep.total_duration()
SubtractByMeanPerWellpandas_process()polars_process()